The GraphRelationshipsLoader class is usable from Python code, and the command line interface.

Usage in Different Contexts

Available Relationships

• Assay_Compound
• Assay_Gene
• Gene_Protein
• Compound_Gene
• Compound_Similarity
• Compound_Compound_Cooccurrence
• Compound_Gene_Cooccurrence
• Compound_Gene_Interaction
• Compound_Transformation

1. Python Code

from chemgraphbuilder.graph_relationships_loader import GraphRelationshipsLoader

uri = "bolt://localhost:7687"
username = "neo4j"
password = "password"

loader = GraphRelationshipsLoader(uri, username, password)
loader.add_relationships("Assay_Gene")
loader.close()

2. Command Line

After installing the package using pip install . or pip install chemgraphbuilder, you can use the command-line interface:

load-graph_relationships --uri bolt://localhost:7687 --username neo4j --password password --relationship_type Assay_Gene